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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57960502_57961825_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57960502 - 57961825
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
ATTTGGACAATC
Flanking Amino Acid:
INIPCKVHVVDPPKLHLDGL
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
39.7
-0.8
2.5
57.79
41.3

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031822
57937476 - 58016222
78747
ENSAPLT00000046080
57935062 - 58016222
81161
ENSAPLT00000031287
57937476 - 58016222
78747
ENSAPLT00000044144
57937476 - 58016222
78747
ENSAPLT00000007443
57937476 - 58016222
78747
ENSAPLT00000040800
57937476 - 58016222
78747
ENSAPLT00000033973
57937476 - 58016222
78747