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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5797050_5797740_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5797050 - 5797740
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
CGTGTCATGACG
Flanking Amino Acid:
RDTSMVHELNRYIPTAAAFG
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
83.4
0.75
0.8
75.9
38
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
46.8
-0.3
1.8
51.47
43.2

Associated Gene:

Gene:
SEC61A2
Ensembl Gene ID:
ENSAPLG00000005921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006192
5783106 - 5797927
14822