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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57971421_57975085_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57971421 - 57975085
Intron Length:
3665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTCCCGCAATT
Flanking Amino Acid:
ELDFSGLLKRREVKQQEEEP
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.4
0.37
1
66.1
40.8
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
49.5
0.04
2.2
73.49
43.7

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033973
57937476 - 58016222
78747
ENSAPLT00000031822
57937476 - 58016222
78747
ENSAPLT00000046080
57935062 - 58016222
81161
ENSAPLT00000031287
57937476 - 58016222
78747
ENSAPLT00000044144
57937476 - 58016222
78747
ENSAPLT00000007443
57937476 - 58016222
78747
ENSAPLT00000040800
57937476 - 58016222
78747