Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57978578_57980008_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57978578 - 57980008

Intron Length:

1431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

EKPQSGSVSVGGNITFIAKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.6

31.8

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

75.1

0.57

1.1

Minor 5ss

35.5

-1.6

3.3

47.5

42.3

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

MYBPC1

Ensembl Gene ID:

ENSAPLG00000007103

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033973

57937476 - 58016222

78747

ENSAPLT00000031822

57937476 - 58016222

78747

ENSAPLT00000046080

57935062 - 58016222

81161

ENSAPLT00000031287

57937476 - 58016222

78747

ENSAPLT00000044144

57937476 - 58016222

78747

ENSAPLT00000007443

57937476 - 58016222

78747

ENSAPLT00000040800

57937476 - 58016222

78747