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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57982666_57984018_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57982666 - 57984018
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGACT
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTCATCTAAATT
Flanking Amino Acid:
DDTSAGTPPADGMSKPAERK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.3
37.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
31.3
-2.1
3
41.7
44.5
Minor BPS
53.4
0.18
1.7
68.53
42.9

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033973
57937476 - 58016222
78747
ENSAPLT00000031287
57937476 - 58016222
78747
ENSAPLT00000007443
57937476 - 58016222
78747
ENSAPLT00000046080
57935062 - 58016222
81161