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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57984055_57990389_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57984055 - 57990389
Intron Length:
6335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
PQEGGTEKGKDEDDTSAGTP
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007443
57937476 - 58016222
78747
ENSAPLT00000046080
57935062 - 58016222
81161
ENSAPLT00000031287
57937476 - 58016222
78747