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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5800870_5801550_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5800870 - 5801550
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAAGTGT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTCCATTGATT
Flanking Amino Acid:
LHNVLPVTFKNTWKLFHFRR
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
63.7
43.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
33.2
-1.9
3.4
47.8
47.7
Minor BPS
62
0.46
1.6
79
36.7

Associated Gene:

Gene:
NUDT5
Ensembl Gene ID:
ENSAPLG00000005616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005846
5800253 - 5809189
8937