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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5800870_5801993_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5800870 - 5801993
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTCCATTGATT
Flanking Amino Acid:
AENTRPKQKLEYVEVISLPK
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
62
0.46
1.6
79
36.7

Associated Gene:

Gene:
NUDT5
Ensembl Gene ID:
ENSAPLG00000005616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027298
5800149 - 5809189
9041
ENSAPLT00000019545
5800149 - 5811701
11553