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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5801595_5801993_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5801595 - 5801993
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AAACCCTTAACT
Flanking Amino Acid:
AENTRPKQKLDDGGMLHNVL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.2
0.88
0.7
84.2
30.9
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
77
0.93
1.2
82.87
37.1

Associated Gene:

Gene:
NUDT5
Ensembl Gene ID:
ENSAPLG00000005616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030638
5801482 - 5811701
10220
ENSAPLT00000005846
5800253 - 5809189
8937