Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58025947_58042375_F

Intron Information:

Intron Rank:

144903

Intron Class:

major

Intron Phase:

Intron Coordinates:

58025947 - 58042375

Intron Length:

16429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGGTA

5'SS Class:

strong_major

3'SS Sequence:

TCTGATGCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTTTACTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

74.8

35.1

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

73.6

0.53

69.5

41.4

Minor 5ss

38.9

-1.2

3.6

54.8

49.4

Minor BPS

73.7

0.82

1.7

93.25

34.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028127

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039101

58024858 - 58043445

18588