About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5802832_5803361_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5802832 - 5803361
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTGTATAATT
Flanking Amino Acid:
INGYCLEFPAGLIEENETAE
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.2
0.77
0.8
78
35.4
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
53.8
0.2
2
76.08
41.4

Associated Gene:

Gene:
NUDT5
Ensembl Gene ID:
ENSAPLG00000005616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030638
5801482 - 5811701
10220
ENSAPLT00000027298
5800149 - 5809189
9041
ENSAPLT00000019545
5800149 - 5811701
11553
ENSAPLT00000005846
5800253 - 5809189
8937