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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58040706_58042375_F

Intron Information:

Intron Rank:
144900
Intron Class:
major
Intron Phase:
Intron Coordinates:
58040706 - 58042375
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGATGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTACTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.6
0.53
1
69.5
41.4
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
73.7
0.82
1.7
93.25
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028127
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028106
58040661 - 58042425
1765