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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58049171_58052600_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58049171 - 58052600
Intron Length:
3430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTTAATA
Flanking Amino Acid:
AAGGQPKAGKGRKKLRLFEY
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.4
0.62
0.9
74.4
34.8
Minor 5ss
35.7
-1.6
2.6
42.3
44.5
Minor BPS
82.5
1.02
0.9
84.13
29.2

Associated Gene:

Gene:
SPIC
Ensembl Gene ID:
ENSAPLG00000007075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046024
58047550 - 58076491
28942
ENSAPLT00000024552
58048743 - 58076491
27749
ENSAPLT00000007337
58048743 - 58076491
27749