Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58052710_58053674_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58052710 - 58053674

Intron Length:

965

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

TTAATTCTTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

ATTGTCTTAATT

Flanking Amino Acid:

DPGYSWRNTINSSGDFYADE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

73.1

31.1

Major BPS

0.92

0.9

86.2

29.1

Major PPT

71.5

0.48

1.1

72.2

37.8

Minor 5ss

33.9

-1.8

3.2

41.6

40.4

Minor BPS

75.1

0.87

1.3

85.57

Associated Gene:

Gene:

SPIC

Ensembl Gene ID:

ENSAPLG00000007075

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046024

58047550 - 58076491

28942

ENSAPLT00000024552

58048743 - 58076491

27749

ENSAPLT00000007337

58048743 - 58076491

27749