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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58053788_58075672_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58053788 - 58075672
Intron Length:
21885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTAATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTCCTCCTAATT
Flanking Amino Acid:
SLHLPNTLIKGYKNCLTVIN
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
75.8
0.58
0.9
72.9
36
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
60.1
0.39
1.7
77.59
39.1

Associated Gene:

Gene:
SPIC
Ensembl Gene ID:
ENSAPLG00000007075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024552
58048743 - 58076491
27749