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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5805412_5808727_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5805412 - 5808727
Intron Length:
3316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGCAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TAACAAAGAATC
Flanking Amino Acid:
TPRQFVLKEEVIVERKWLKL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
64.6
40.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
37.9
-1.4
3.4
55.3
48.9
Minor BPS
38.7
-0.8
1.8
47.08
34.2

Associated Gene:

Gene:
NUDT5
Ensembl Gene ID:
ENSAPLG00000005616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030638
5801482 - 5811701
10220
ENSAPLT00000027298
5800149 - 5809189
9041
ENSAPLT00000019545
5800149 - 5811701
11553
ENSAPLT00000005846
5800253 - 5809189
8937