Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58055632_58056247_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58055632 - 58056247

Intron Length:

616

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTCTA

5'SS Class:

strong_major

3'SS Sequence:

AATATTCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

TCTTTTCTGACT

Flanking Amino Acid:

MNFPDQDILGQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.9

79.8

35.3

Major BPS

65.7

0.39

71.3

30.3

Major PPT

77.5

0.62

0.9

70.4

40.1

Minor 5ss

37.9

-1.4

47.1

42.6

Minor BPS

60.2

0.4

1.6

78.88

37.7

Associated Gene:

Gene:

SPIC

Ensembl Gene ID:

ENSAPLG00000007075

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046024

58047550 - 58076491

28942

ENSAPLT00000007337

58048743 - 58076491

27749