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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58056275_58057736_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58056275 - 58057736
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTATTTTAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
76.7
0.6
1
74.3
39.2
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
67.7
0.53
1.4
75.88
33.9

Associated Gene:

Gene:
SPIC
Ensembl Gene ID:
ENSAPLG00000007075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007337
58048743 - 58076491
27749