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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58057831_58075672_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58057831 - 58075672
Intron Length:
17842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTATTTAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTCCTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.6
0.58
1
70.7
38.7
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
77.2
0.85
1.3
79.26
36.6

Associated Gene:

Gene:
SPIC
Ensembl Gene ID:
ENSAPLG00000007075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007337
58048743 - 58076491
27749