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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58078704_58079513_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58078704 - 58079513
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTAACGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTTCTTAACG
Flanking Amino Acid:
LKGLCRNQQARKECKFVHDF
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68.5
0.42
1
63
38.3
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
75.2
0.65
1.3
71.56
41.5

Associated Gene:

Gene:
PARP12
Ensembl Gene ID:
ENSAPLG00000006979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020104
58078027 - 58093329
15303
ENSAPLT00000007249
58078027 - 58121434
43408
ENSAPLT00000044463
58078027 - 58136733
58707