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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58079650_58080698_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58079650 - 58080698
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTACTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TTTTCCTTACTC
Flanking Amino Acid:
LQNDPSLLPEVCLHYNKGDG
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
70.3
0.46
1
68.6
36.3
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
78
0.86
1.5
86.11
32.2

Associated Gene:

Gene:
PARP12
Ensembl Gene ID:
ENSAPLG00000006979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044463
58078027 - 58136733
58707
ENSAPLT00000020104
58078027 - 58093329
15303
ENSAPLT00000007249
58078027 - 58121434
43408