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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58083138_58084428_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58083138 - 58084428
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
EKEYCDPKNIRSSNVVTESG
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
73.2
35.5
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
41.6
-0.9
3
58.8
45.4
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
PARP12
Ensembl Gene ID:
ENSAPLG00000006979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044463
58078027 - 58136733
58707
ENSAPLT00000020104
58078027 - 58093329
15303
ENSAPLT00000007249
58078027 - 58121434
43408