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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5808837_5810856_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5808837 - 5810856
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTACTCTGAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.2
0.68
0.8
75.8
32.8
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
52.8
-0
1.6
60.14
40.9

Associated Gene:

Gene:
NUDT5
Ensembl Gene ID:
ENSAPLG00000005616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030638
5801482 - 5811701
10220
ENSAPLT00000019545
5800149 - 5811701
11553