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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58090557_58091217_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58090557 - 58091217
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGTA
5'SS Class:
major
3'SS Sequence:
CTTCTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACTACAATGATA
Flanking Amino Acid:
QNPSLWELYQWQKEKMQKSN
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
74.3
36.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.3
0.75
0.8
77.5
29.5
Minor 5ss
35.3
-1.7
3.5
45.8
44.7
Minor BPS
45.2
-0.3
1.8
55.53
36.9

Associated Gene:

Gene:
PARP12
Ensembl Gene ID:
ENSAPLG00000006979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044463
58078027 - 58136733
58707
ENSAPLT00000020104
58078027 - 58093329
15303
ENSAPLT00000007249
58078027 - 58121434
43408