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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58100591_58100696_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58100591 - 58100696
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTCTCTTCATT
Flanking Amino Acid:
FRFKICPETESEPLEPIP*
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.4
0.62
0.8
78.5
28.7
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
65.6
0.57
1.7
84.73
36.1

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029195
58100462 - 58329351
228890