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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58100860_58103597_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58100860 - 58103597
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCACCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
ATTTCTTGAACT
Flanking Amino Acid:
WPEPEKFIPERFTEEAKKEQ
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
75.2
0.57
0.8
66.2
35.4
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
78.4
0.97
1.3
91.49
30.9

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493
ENSAPLT00000029195
58100462 - 58329351
228890