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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58106266_58166498_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58106266 - 58166498
Intron Length:
60233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
GAAAATGTAATT
Flanking Amino Acid:
QEIDEFSAKHMVPDYQNVQE
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.9
0.67
0.8
76.3
32.3
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
43.1
-0.4
2
56.58
39.6

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006928
58099995 - 58338487
238493
ENSAPLT00000029195
58100462 - 58329351
228890
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365