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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5816788_5818908_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5816788 - 5818908
Intron Length:
2121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TTTCCTATTACT
Flanking Amino Acid:
GTLVVSGREDPPIHAQE
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
80.8
0.69
0.9
81.2
36.5
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
57.7
0.32
1.9
82.9
37.7

Associated Gene:

Gene:
CDC123
Ensembl Gene ID:
ENSAPLG00000005383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005599
5816765 - 5848343
31579