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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58187932_58189728_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58187932 - 58189728
Intron Length:
1797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
AAATCTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCCTTTTAAAT
Flanking Amino Acid:
SLFKPLLILILSFPFIMIPL
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
71.9
39.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
0.9
66
39.8
Minor 5ss
37.9
-1.4
2.7
48.5
40.3
Minor BPS
58.1
0.33
1.4
69.62
41.7

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493
ENSAPLT00000029195
58100462 - 58329351
228890