About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5818970_5823275_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5818970 - 5823275
Intron Length:
4306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAAACAC
5'SS Class:
weak_major
3'SS Sequence:
GTTCTTTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
TTCTTTGTTAAG
Flanking Amino Acid:
SDDAEEIQVSAPEFPEFTAK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.2
1.2
52.3
39
Major BPS
67
0.42
1.1
57.7
39
Major PPT
70.3
0.46
1.1
75.1
38.8
Minor 5ss
33.6
-1.9
3.3
43
44.2
Minor BPS
41.6
-0.8
2.3
51.06
43.6

Associated Gene:

Gene:
CDC123
Ensembl Gene ID:
ENSAPLG00000005383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005599
5816765 - 5848343
31579