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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58189878_58192396_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58189878 - 58192396
Intron Length:
2519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCATTCTTAATG
Flanking Amino Acid:
ADSGKAFDIQRCYNCFTLDV
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.9
33
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.5
0.6
1
71.3
38
Minor 5ss
39.4
-1.2
2.9
50.7
45.6
Minor BPS
71.2
0.53
1.3
67.41
40.8

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493
ENSAPLT00000029195
58100462 - 58329351
228890