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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58192486_58199781_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58192486 - 58199781
Intron Length:
7296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTTCACAATA
Flanking Amino Acid:
PAFSETKLKEMTPLINQACD
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78
0.63
0.8
69.8
36.2
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
54.9
0.15
1.8
70.79
35.2

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493
ENSAPLT00000029195
58100462 - 58329351
228890