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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58199899_58227694_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58199899 - 58227694
Intron Length:
27796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTTGACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTCTTTTGACT
Flanking Amino Acid:
TDFSNFTNRTKPNLISKPML
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73.5
0.53
0.9
73.6
36
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
74.3
0.85
1.1
87.98
30.3

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493
ENSAPLT00000029195
58100462 - 58329351
228890