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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58227792_58249984_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58227792 - 58249984
Intron Length:
22193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
ATCTGCTAAAAT
Flanking Amino Acid:
KLIKEYGPVCGYYIGRQMFV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75
38.1
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
47
-0.3
2.8
56.2
48
Minor BPS
49.2
0.02
2.2
71.23
45.5

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493
ENSAPLT00000029195
58100462 - 58329351
228890