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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58250038_58275384_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58250038 - 58275384
Intron Length:
25347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTACCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTTTTACC
Flanking Amino Acid:
FIGNLLFFREGFWENHTKLI
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.4
0.73
0.8
76.9
36.3
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
77.3
0.84
1.5
86.65
30.8

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029195
58100462 - 58329351
228890
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493