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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58275479_58326365_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58275479 - 58326365
Intron Length:
50887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTCTTTATTT
Flanking Amino Acid:
LLAVFVVLLYWYSTSAFSKL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.5
0.78
0.9
77.1
41.8
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
66.7
0.6
1.5
79.34
37

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029195
58100462 - 58329351
228890
ENSAPLT00000023660
58099995 - 58329351
229357
ENSAPLT00000021215
58099987 - 58329351
229365
ENSAPLT00000006928
58099995 - 58338487
238493