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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5831906_5833998_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5831906 - 5833998
Intron Length:
2093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CGTTCTGAAACA
Flanking Amino Acid:
DSPDPSLDYELVLRKWCELI
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.3
0.79
0.6
81.2
23.8
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
47.5
-0.1
2.3
63.17
43.7

Associated Gene:

Gene:
CDC123
Ensembl Gene ID:
ENSAPLG00000005383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005599
5816765 - 5848343
31579