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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58326567_58338300_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58326567 - 58338300
Intron Length:
11734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACGC
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TCTCTCTTGGTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.2
41.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
85.7
0.8
0.9
80.6
37
Minor 5ss
31.7
-2.1
3.2
42.6
44.3
Minor BPS
43.6
-0.4
3.4
71.41
40.3

Associated Gene:

Gene:
TBXAS1
Ensembl Gene ID:
ENSAPLG00000006656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006928
58099995 - 58338487
238493