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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58387564_58401568_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
58387564 - 58401568
Intron Length:
14005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTTCTGC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGGTTTCACT
Flanking Amino Acid:
GQGLLLNACAGMASHVQVFS
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.4
49.5
42.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.7
0.83
0.8
81.8
34.6
Minor 5ss
45.8
-0.4
2.6
60.3
44.2
Minor BPS
48.1
-0
2.3
71.8
45.5

Associated Gene:

Gene:
HIPK2
Ensembl Gene ID:
ENSAPLG00000006030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006299
58387443 - 58484314
96872