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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58450030_58452189_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58450030 - 58452189
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTCTCTTACAG
Flanking Amino Acid:
LYPGASEYDQIRYISQTQGL
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.5
0.8
0.7
79.5
26.2
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
49.4
-0.1
1.8
57.38
44.1

Associated Gene:

Gene:
HIPK2
Ensembl Gene ID:
ENSAPLG00000006030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006299
58387443 - 58484314
96872