Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58454392_58458125_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58454392 - 58458125

Intron Length:

3734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTATGTGAC

5'SS Class:

major

3'SS Sequence:

TCTCCTCGCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

GTTGGCTGATTT

Flanking Amino Acid:

THLLDFPHSTHVKSCFQNME

Intron Amino Acid Position:

579

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.2

0.43

1.1

62.5

36.3

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

0.52

0.9

67.9

32.2

Minor 5ss

41.3

-1

3.1

57.1

41.8

Minor BPS

44.8

-0.3

2.1

65.23

45.5

Associated Gene:

Gene:

HIPK2

Ensembl Gene ID:

ENSAPLG00000006030

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006299

58387443 - 58484314

96872