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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58458289_58460958_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58458289 - 58460958
Intron Length:
2670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCACTCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CCATACTAAATT
Flanking Amino Acid:
NNQLNTVHNQPSAASMAAVA
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
67.1
0.38
1
58.9
41.7
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
49.8
0.07
1.9
65.18
45.6

Associated Gene:

Gene:
HIPK2
Ensembl Gene ID:
ENSAPLG00000006030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006299
58387443 - 58484314
96872