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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58463007_58467168_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58463007 - 58467168
Intron Length:
4162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
CTCTGGCCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGAAAT
U12 Branch Point Sequence:
ATTTTGCTAAGA
Flanking Amino Acid:
LQIQPGLLAQQAWPSGTQQI
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
50.6
0.02
1.1
57
36.4
Major PPT
62.9
0.29
1
56.9
38.9
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
45.4
-0.3
2.5
65.71
40.9

Associated Gene:

Gene:
HIPK2
Ensembl Gene ID:
ENSAPLG00000006030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006299
58387443 - 58484314
96872