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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5846328_5848163_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5846328 - 5848163
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCTG
5'SS Class:
major
3'SS Sequence:
ATCTTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATCCATTATCT
Flanking Amino Acid:
DQSEEEATEQDYPVFRCTNS
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
64.5
46.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.7
0.44
1
71
33.1
Minor 5ss
33.3
-1.9
3.6
46.8
48.5
Minor BPS
59.7
0.38
1.9
80.51
40.5

Associated Gene:

Gene:
CDC123
Ensembl Gene ID:
ENSAPLG00000005383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005599
5816765 - 5848343
31579