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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58467312_58468362_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58467312 - 58468362
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCAG
5'SS Class:
major
3'SS Sequence:
CCCCCCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCATTTTAAACA
Flanking Amino Acid:
MAGTQPLADWRNTHAHGSHY
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
62.1
44.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.9
0.63
0.7
71.5
26.4
Minor 5ss
36.6
-1.5
3.1
46.7
48.6
Minor BPS
53
0.09
1.6
59.83
40.5

Associated Gene:

Gene:
HIPK2
Ensembl Gene ID:
ENSAPLG00000006030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006299
58387443 - 58484314
96872