About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58482091_58483846_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58482091 - 58483846
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATCC
Flanking Amino Acid:
QQQQPLNLSQAQQHITTDRT
Intron Amino Acid Position:
1056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.8
0.69
0.9
73.6
40.9
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
63.4
0.4
1.6
69.53
42.6

Associated Gene:

Gene:
HIPK2
Ensembl Gene ID:
ENSAPLG00000006030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006299
58387443 - 58484314
96872