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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58579938_58581387_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58579938 - 58581387
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CATTAATTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CTGACATTAATT
Flanking Amino Acid:
AIPDAYLVTAVLARRAVLQN
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
72.9
31.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76.4
0.59
0.9
66.3
43.7
Minor 5ss
26.8
-2.7
3.3
35
42.5
Minor BPS
60.2
0.4
1.7
73.75
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031652
58513977 - 58649849
135873
ENSAPLT00000021784
58513977 - 58649743
135767
ENSAPLT00000005795
58546786 - 58649849
103064
ENSAPLT00000047730
58513977 - 58649849
135873