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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58590735_58596971_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58590735 - 58596971
Intron Length:
6237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
GTTTTTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTCCTCCATT
Flanking Amino Acid:
LGFPVQQIAEPFHYPKLNVS
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.2
80.5
33.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.4
0.75
0.8
81.6
30.5
Minor 5ss
34.3
-1.8
2.8
43.1
36.9
Minor BPS
65.7
0.57
2
88.16
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021784
58513977 - 58649743
135767
ENSAPLT00000005795
58546786 - 58649849
103064
ENSAPLT00000047730
58513977 - 58649849
135873
ENSAPLT00000031652
58513977 - 58649849
135873