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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58599880_58607632_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58599880 - 58607632
Intron Length:
7753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAGA
5'SS Class:
major
3'SS Sequence:
AATTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TACAACGTAAAA
Flanking Amino Acid:
ASFAGSNIVQIVNVSRLDGV
Intron Amino Acid Position:
1188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.2
39.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
39
-1.2
2.8
49.8
46
Minor BPS
44
-0.4
2.2
55.78
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047730
58513977 - 58649849
135873
ENSAPLT00000031652
58513977 - 58649849
135873
ENSAPLT00000021784
58513977 - 58649743
135767
ENSAPLT00000005795
58546786 - 58649849
103064