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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_58633515_58635162_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58633515 - 58635162
Intron Length:
1648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
CTCCTCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
GTTGATTTATTT
Flanking Amino Acid:
VAETNKINKEIQTALRHKSE
Intron Amino Acid Position:
1486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
79
0.65
0.7
77
25.1
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
49.1
0.01
1.8
69.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047730
58513977 - 58649849
135873
ENSAPLT00000031652
58513977 - 58649849
135873
ENSAPLT00000021784
58513977 - 58649743
135767
ENSAPLT00000005795
58546786 - 58649849
103064